sme_contrib.optimize.SteadyState.plot_model_concentration

SteadyState.plot_model_concentration(index=0, ax=None, cmap=None)

Plot the model concentration as a 2d heat map

The model concentration is normalized such that the maximum pixel intensity matches the maximum pixel intensity of the target concentration image

Parameters

  • index (int) – Optionally specify index of concentration

  • ax (matplotlib.axes._subplots.AxesSubplot) – Optionally specify the axes to draw the plot on

  • cmap (matplotlib.Colormap) – Optionally specify the colormap to use

Returns

The axes the plot was drawn on

Return type

matplotlib.axes._subplots.AxesSubplot